```
% The packages used here are just a sample. You may need others, and may not need some of these. It doesn't hurt to leave them in, unless they start to conflict with other packages you've added. Chapter 2 has example code for equations, figures, tables, citations, abbreviations, etc. If there are sections labeled 'optional' that you don't want, just comment them out. -jg
\documentclass[reqno,12pt,oneside]{report} % right-side equation numbering, 12 point font, print one-sided
%\documentclass[reqno,12pt,twoside,openright]{report} % right-side equation numbering, 12 point font, print two-sided, Chapters start on odd pages. Rackham only accepts one-sided, so this is for personal printings.
\usepackage{rac} % Use Rackham thesis style file
\usepackage{aas_macros} % To allow the reading of ADS journal references in the bibliography
\usepackage[intlimits]{amsmath} % Puts the limits of integrals on top and bottom
\usepackage{amsxtra} % Use various AMS packages
\usepackage{amsthm}
\usepackage{amssymb}
\usepackage{amsfonts}
\usepackage{graphicx} % Add some packages for figures. Read epslatex.pdf on ctan.tug.org
\usepackage{rotating}
\usepackage{color}
\usepackage{epsfig}
\usepackage{subfigure} % To make subfigures. Read subfigure.pdf on ctan.tug.org
\usepackage{verbatim}
\usepackage{natbib} % Allows you to use BibTeX
\usepackage[printonlyused]{acronym} % For the List of Abbreviations. Read acronym.pdf on ctan.tug.org
\usepackage{setspace} % Allows you to specify the line spacing
\doublespacing % \onehalfspacing for 1.5 spacing, \doublespacing for 2.0 spacing.
\newcommand{\sun}{\ensuremath{\odot}} % sun symbol is \sun
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
% Various theorem environments. All of the following have the same numbering
% system as theorem.
\theoremstyle{plain}
\newtheorem{theorem}{Theorem}
\newtheorem{prop}[theorem]{Proposition}
\newtheorem{corollary}[theorem]{Corollary}
\newtheorem{lemma}[theorem]{Lemma}
\newtheorem{question}[theorem]{Question}
\newtheorem{conjecture}[theorem]{Conjecture}
\newtheorem{assumption}[theorem]{Assumption}
\theoremstyle{definition}
\newtheorem{definition}[theorem]{Definition}
\newtheorem{notation}[theorem]{Notation}
\newtheorem{condition}[theorem]{Condition}
\newtheorem{example}[theorem]{Example}
\newtheorem{introduction}[theorem]{Introduction}
\theoremstyle{remark}
\newtheorem{remark}[theorem]{Remark}
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
\numberwithin{theorem}{chapter} % Numbers theorems "x.y" where x
% is the section number, y is the
% theorem number
%\renewcommand{\thetheorem}{\arabic{chapter}.\arabic{theorem}}
%\makeatletter % This sequence of commands will
%\let\c@equation\c@theorem % incorporate equation numbering
%\makeatother % into the theorem numbering scheme
%\renewcommand{\theenumi}{(\roman{enumi})}
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
% If printing two-sided, this makes sure that any blank page at the
% end of a chapter will not have a page number.
\makeatletter
\def\cleardoublepage{\clearpage\if@twoside \ifodd\c@page\else
\hbox{}
\thispagestyle{empty}
\newpage
\if@twocolumn\hbox{}\newpage\fi\fi\fi}
\makeatother
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
%This command creates a box marked ``To Do'' around text.
%To use type \todo{ insert text here }.
\newcommand{\todo}[1]{\vspace{5 mm}\par \noindent
\marginpar{\textsc{To Do}}
\framebox{\begin{minipage}[c]{0.95 \textwidth}
\tt\begin{center} #1 \end{center}\end{minipage}}\vspace{5 mm}\par}
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
\begin{document}
\bibliographystyle{agu04} % Set the bibliography style. agu04, plain, alpha, etc.
% Title page as required by Rackham dissertation guidelines
\titlepage{The Title of Your Dissertation}{Your Name}{Doctor of Philosophy}
{Atmospheric and Space Sciences}{2008}
{Professor Albert Einstein, Chair\\
Professor Werner Heisenberg\\
Associate Professor Hermann von Helmholtz\\
Associate Professor Edwin Hubble\\
Assistant Professor John von Neumann}
% Begin the front matter as required by Rackham dissertation guidelines
\initializefrontsections
% Optional Frontispiece
\frontispiece{\includegraphics[width=6in]{Intro/Happy} Find a cool picture to go here.}
% Optional, but recommended, Copyright page
\copyrightpage{Your Name}
% Page numbering. If you don't include a frontispiece or copyright page, you'll need to change this for two-sided printing.
\makeatletter
\if@twoside \setcounter{page}{4} \else \setcounter{page}{1} \fi
\makeatother
% Optional Dedication page
\dedicationpage{For all the people}
% Optional Acknowledgements page
\startacknowledgementspage
\input{Intro/Acknowledgements}
\label{Acknowledgements}
% Optional Preface page
%\startprefacepage
%\input{Preface}
%\label{Preface}
% Table of contents, list of figures, etc.
\tableofcontents % Required
\listoffigures % Required if there is more than one figure
%\listoftables % Required if there is more than one table
%\listofmaps % Required if there is more than one map
%\listofappendices % Required if there is more than one appendix
\listofabbreviations % Optional. Abbreviations should be stored in a file named abbr.tex
% Optional in-dissertation Abstract Page
\startabstractpage
{The Title of Your Dissertation}{Your Name}{Chair: Albert Einstein}
\input{Abstract/Abstract}
\label{Abstract}
\startthechapters
% The individual files for each of the chapters are put here.
% Save each chapter of your thesis to a seperate tex file
% and then use the \input command to include this file in your
% thesis. For instance you can save a file to "intro.tex" and
% then type \input{intro}.
\chapter{Introduction}
\label{chap:Intro}
\input{Intro/Intro}
\chapter{Particle Transport and Acceleration}
\label{chap:Particles}
\input{Chap2/chap2}
\startappendices
\appendix{Two-Dimensional Crank-Nicolson Scheme for a Uniform Spherical Grid}
\label{app:CN Scheme}
\input{Appendices/Appendix_Open_Flux}
\startbibliography
\begin{singlespace} % Bibliography must be single spaced
\bibliography{References} % Use the BibTeX file ``References.bib''.
\end{singlespace}
% An external Abstract that can be printed at the end of the document,
% for separate submission to Rackham. Comment it out when not needed. - jg
%\startextabstractpage
%{The Title of Your Dissertation}{Your Name}{Chair: Albert Einstein}
%\input{Abstract/Abstract}
%\label{ExtAbstract}
\end{document}
```