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This is a template we have designed to facilitate the reporting of whole genome sequencing-based results for Mycobacterium tuberculosis diagnosis, phenotyping, and epidemiologcal clustering. A manuscript describing how we arrived at this template is being submitted to PeerJ in October, 2017. We will update this document with a link to the article – "Evidence-Based Design and Evaluation of a Whole Genome Sequencing Clinical Report for the Reference Microbiology Laboratory" – when it comes online.